// OHSU Registration // Get image path properties and rename convention stk = getTitle() dir = getInfo("image.directory"); imgdir = dir+stk; svdir = dir+"A02\\" name = File.getNameWithoutExtension(imgdir); // Run registration run("TurboReg "); // User input to proceed to renaming output. waitForUser("Press 'OK' when registration is finished"); rename(name+"_reg"); reg = getTitle(); saveAs("tiff", svdir+reg+".tif"); run("Set Measurements...", "mean redirect=None decimal=3"); roiManager("Multi Measure"); saveAs("Results", svdir+reg+"_Results.csv");