//=============================================================================================// // // // ImageJ macro which measure filopodia density and length. // // Batch processing version of the macro // // This macro requires Enhanced Local Contrast (CLAHE.class), Skeletonize3D.jar and AnalyzeSkeleton.jar // // // // Created the 17.08.2016 by Guillaume Jacquemet and Alex Carisey // // // // Version 1.1 - 18.01.2017 // // // //=============================================================================================// // Precautionary measure and variable initialization requires("1.51a"); // To maintain general compatibility requirements (i.e. presence of CLAHE) current_version_script = "v1.1"; // The version number is saved in the log of the expriment number_of_tif = 0; // Initialization of file counter file_name_index = 0; // Initialization of index for storage // Verify the presence of slave plugins path_plugins = getDirectory("plugins"); plugin_list = getFileList(path_plugins); haz_skeletonize = false; haz_analyzeskeleton = false; for (i=0;i