/*
 * Look preset algorithms to understand how they work.
 * Below you will find a description for images used in these algorithms.
 * srcImage, adjust, image are variables which contain names of copies of the processed image.
 */

// This image will be used only if you will select manual adjustment during FibrilJ analysis.
selectWindow( srcImage );

// This image copy must be segmented here (black on white, 8-bit) and will be used to define the edges and centerlines by FibrilJ.
selectWindow( adjust );
/* here is a place for image segmentation actions */

// This image copy will be combined with defined edges and centerlines for visual control. So you may want to enhance the image here.
selectWindow( image );
/* here is a place for image adjusment actions */