To extend the axial field of view in 3D SMLM experiments, data can
be acquired in multiple z-stage positions [1]. However,
the astigmatism method
can estimate only the relative axial positions of molecules with respect
to the focal plane. To find the absolute
coordinates, the correct
offset must be added to the axial positions of each molecule. The
new
coordinate can be determined as
where
is the initial z-stage offset,
is the estimated molecular position relative to the focal plane (
for 2D data),
is the step between two positions
of the Z-stage,
is the image frame in which a given molecule
appeared,
is the number of images taken in each
z-stage position, and
is the number of z-stage
positions. All
variables are in nm.