The NuclearParticleDetector2D detects nuclei and particles inside these * nuclei and gives some statistics about particles, like particle number per * nuclei, particle size, sum of intensities, etc. Nuclei are detected via the * NucleusDetector2D by using the Niblack thresholding. As post-process the * nuclei channel is gamma corrected and filter with a small gaussian, due to * uneven illumination of the nuclei in the images. This may depends on the * input image data and can be switched off separately. Particles are detected * via the ParticleDetectorUWT2D.
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image with detected nuclei and particles
detected nuclei regions
detected particle regions
*table with statistic results
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Nuclei Channel
Channel number of the * nuclei image channel
range [1, #ImageChannels]
default: 2
Particle * Channel
Channel number of the particle image channel
*range [1, #ImageChannels]
default: * 1
Verbose
Output of additional messages * on console is disabled/enabled
default: * false
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Nuclei Channel
Channel number of the * nuclei image channel
range [1, #ImageChannels]
default: 2
Particle * Channel
Channel number of the particle image channel
*range [1, #ImageChannels]
default: * 1
Use Gamma * Correction
Flag to use gamma correction for nuclei * channel
default: true
Gamma Value
Gamma correction value * for nuclei channel
range [0, 1]
default: * 0.5
Use Gaussian * Filter
Flag to use gaussian filter for nuclei * channel
default: true
Nucleus Detector
Detector to use for * nuclei detection
Configurable via GUI (see Nucleus Detector 2D)
Particle * Detector
Detector to use for particle detection
*Configurable via GUI (see Particle Detector UWT 2D)
Verbose
Output of additional messages * on console is disabled/enabled
default: * false